NAME¶
Bio::Matrix::PSM::IO::psiblast - PSM psiblast parser
SYNOPSIS¶
See Bio::Matrix::PSM::IO for documentation
DESCRIPTION¶
Parser for ASCII matrices from PSI-BLAST (blastpgp program in BLAST
distribution).
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to one of the Bioperl
mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - James Thompson¶
Email tex@biosysadmin.com
APPENDIX¶
new¶
Title : new
Usage : my $psmIO = Bio::Matrix::PSM::IO->new(-format=>'psiblast',
-file=>$file);
Function: Associates a file with the appropriate parser
Throws :
Example :
Args :
Returns : Bio::Matrix::PSM::ProtMatrix->new(@args);
next_psm¶
Title : next_psm
Usage : my $psm = $psmIO->next_psm();
Function: Reads the next PSM from the input file, associated with this object
Throws : None
Returns : Bio::Matrix::PSM::ProtPsm object
Args : none