NAME¶
Bio::MapIO::mapmaker - A Mapmaker Map reader
SYNOPSIS¶
# do not use this object directly it is accessed through the Bio::MapIO system
use Bio::MapIO;
my $mapio = Bio::MapIO->new(-format => "mapmaker",
-file => "mapfile.map");
while ( my $map = $mapio->next_map ) { # get each map
foreach my $marker ( $map->each_element ) {
# loop through the markers associated with the map
}
}
DESCRIPTION¶
This object contains code for parsing and processing Mapmaker output and
creating Bio::Map::MapI objects from it.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Jason Stajich¶
Email jason@bioperl.org
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
next_map¶
Title : next_map
Usage : my $map = $factory->next_map;
Function: Get one or more map objects from the Mapmaker input
Returns : Bio::Map::MapI
Args : none
See Bio::Map::MapI
write_map¶
Title : write_map
Usage : $factory->write_map($map);
Function: Write a map out through the factory
Returns : none
Args : Bio::Map::MapI