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.\" ========================================================================
.\"
.IX Title "Bio::MapIO::mapmaker 3pm"
.TH Bio::MapIO::mapmaker 3pm "2014-07-13" "perl v5.18.2" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
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.SH "NAME"
Bio::MapIO::mapmaker \- A Mapmaker Map reader
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
# do not use this object directly it is accessed through the Bio::MapIO system
.PP
.Vb 8
\&    use Bio::MapIO;
\&    my $mapio = Bio::MapIO\->new(\-format => "mapmaker",
\&                                              \-file   => "mapfile.map");
\&    while ( my $map = $mapio\->next_map ) {  # get each map
\&            foreach my $marker ( $map\->each_element ) {
\&               # loop through the markers associated with the map
\&            }
\&    }
.Ve
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
This object contains code for parsing and processing Mapmaker output
and creating Bio::Map::MapI objects from it.
.SH "FEEDBACK"
.IX Header "FEEDBACK"
.SS "Mailing Lists"
.IX Subsection "Mailing Lists"
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list.  Your participation is much appreciated.
.PP
.Vb 2
\&  bioperl\-l@bioperl.org                  \- General discussion
\&  http://bioperl.org/wiki/Mailing_lists  \- About the mailing lists
.Ve
.SS "Support"
.IX Subsection "Support"
Please direct usage questions or support issues to the mailing list:
.PP
\&\fIbioperl\-l@bioperl.org\fR
.PP
rather than to the module maintainer directly. Many experienced and 
reponsive experts will be able look at the problem and quickly 
address it. Please include a thorough description of the problem 
with code and data examples if at all possible.
.SS "Reporting Bugs"
.IX Subsection "Reporting Bugs"
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
.PP
.Vb 1
\&  https://github.com/bioperl/bioperl\-live/issues
.Ve
.SH "AUTHOR \- Jason Stajich"
.IX Header "AUTHOR - Jason Stajich"
Email jason@bioperl.org
.SH "APPENDIX"
.IX Header "APPENDIX"
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
.SS "next_map"
.IX Subsection "next_map"
.Vb 5
\& Title   : next_map
\& Usage   : my $map = $factory\->next_map;
\& Function: Get one or more map objects from the Mapmaker input
\& Returns : Bio::Map::MapI
\& Args    : none
.Ve
.PP
See Bio::Map::MapI
.SS "write_map"
.IX Subsection "write_map"
.Vb 5
\& Title   : write_map
\& Usage   : $factory\->write_map($map);
\& Function: Write a map out through the factory
\& Returns : none
\& Args    : Bio::Map::MapI
.Ve