NAME¶
Bio::IdCollectionI - interface for objects with multiple identifiers
SYNOPSIS¶
# to test this is an identifiable collection object
$obj->isa("Bio::IdCollectionI") ||
$obj->throw("$obj does not implement the Bio::IdCollectionI interface");
# accessors
@authorities = $obj->id_authorities();
@ids = $obj->ids();
$id = $obj->ids($authority);
DESCRIPTION¶
This interface describes methods expected on objects that have multiple
identifiers, each of which is controlled by a different authority.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to one of the Bioperl
mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Lincoln Stein¶
Email lstein@cshl.org
Implementation Specific Functions¶
These functions are the ones that a specific implementation must define.
id_authorities¶
Title : id_authorities
Usage : @array = $obj->id_authorities()
Function: Return the authorities which have names for this object.
The authorities can then be used to select ids.
Returns : An array
Status : Virtual
ids¶
Title : ids
Usage : @ids = $obj->ids([$authority1,$authority2...])
Function: return a list of Bio::IdentifiableI objects, optionally
filtered by the list of authorities.
Returns : A list of Bio::IdentifiableI objects.
Status : Virtual