NAME¶
Bio::DB::SeqVersion - front end to querying databases for identifier versions
SYNOPSIS¶
use Bio::DB::SeqVersion;
my $query = Bio::DB::SeqVersion->new(-type => 'gi');
my @all_gis = $query->get_all(2);
my $live_gi = $query->get_recent(2);
DESCRIPTION¶
The default type is 'gi'.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Brian Osborne¶
Email bosborne at alum.mit.edu
CONTRIBUTORS¶
Torsten Seemann - torsten.seemann AT infotech.monash.edu.au
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
new()¶
Usage : my $obj = Bio::DB::SeqVersion->new();
Function: Create a Bio::DB::SeqVersion object
Returns : An instance of Bio::DB::SeqVersion
Args : -type Identifier namespace, default is 'gi'
get_recent()¶
Usage :
Function:
Example :
Returns :
Args :
get_all()¶
Usage :
Function:
Example :
Returns :
Args :
_load_seqversion_module¶
Title : _load_seqversion_module
Usage : Used internally
Function: Loads up a module at run time on demand
Example :
Returns :
Args : Name of identifier type
default_id_type¶
Title : default_id_type
Usage : my $type = $self->default_id_type
Function: Returns default identifier type for this module
Returns : string
Args : none