NAME¶
Bio::DB::GFF::Aggregator::orf -- An aggregator for orf regions
SYNOPSIS¶
use Bio::DB::GFF;
# Open the sequence database
my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
-dsn => 'dbi:mysql:elegans42',
-aggregator => ['orf','clone'],
);
---------------------------
Aggregator method: orf
Main method: -none-
Sub methods: ORF
---------------------------
DESCRIPTION¶
Bio::DB::GFF::Aggregator::orf was written to work with the "cds"
glyph. GFF files. It aggregates raw "ORF" features into
"coding" features. This is basically identical to the
"coding" aggregator, except that it looks for features of type
"ORF" rather than "cds".
method¶
Title : method
Usage : $aggregator->method
Function: return the method for the composite object
Returns : the string "orf"
Args : none
Status : Public
part_names¶
Title : part_names
Usage : $aggregator->part_names
Function: return the methods for the sub-parts
Returns : the list "CDS"
Args : none
Status : Public
BUGS¶
None reported.
SEE ALSO¶
Bio::DB::GFF, Bio::DB::GFF::coding, Bio::DB::GFF::Aggregator,
Bio::Graphics::Glyph::cds
AUTHOR¶
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory.
This library is free software; you can redistribute it and/or modify it under
the same terms as Perl itself.