SYNOPSIS¶
# not to be used directly
DESCRIPTION¶
MapperI defines methods for classes capable for mapping locations between
coordinate systems.
Title : in
Usage : $obj->in('peptide');
Function: Set and read the input coordinate system.
Example :
Returns : value of input system
Args : new value (optional), Bio::LocationI
out¶
Title : out
Usage : $obj->out('peptide');
Function: Set and read the output coordinate system.
Example :
Returns : value of output system
Args : new value (optional), Bio::LocationI
swap¶
Title : swap
Usage : $obj->swap;
Function: Swap the direction of mapping: input <-> output)
Example :
Returns : 1
Args :
test¶
Title : test
Usage : $obj->test;
Function: test that both components are of same length
Example :
Returns : ( 1 | undef )
Args :
map¶
Title : map
Usage : $newpos = $obj->map($loc);
Function: Map the location from the input coordinate system
to a new value in the output coordinate system.
Example :
Returns : new value in the output coordiante system
Args : Bio::LocationI
return_match¶
Title : return_match
Usage : $obj->return_match(1);
Function: A flag to turn on the simplified mode of
returning only one joined Match object or undef
Example :
Returns : boolean
Args : boolean (optional)