NAME¶
Bio::Graphics::Glyph::splice_site - The "splice_site" glyph
SYNOPSIS¶
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
DESCRIPTION¶
This glyph was designed to show an inverted "L" representing splice
donors and acceptors. The vertical part of the L points downwards and is
positioned in the center of the range (even if the range is quite large).
In addition to the usual glyph options, this glyph recognizes:
Option Value Description
------ ----- -----------
direction "left" or "right" direction the short part of the L
points
height_fraction 0.0 - 1.0 fractional height of the glyph,
usually a callback that uses the
feature's score to determine its
height
BUGS¶
Please report them.
SEE ALSO¶
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow,
Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna,
Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic,
Bio::Graphics::Glyph::graded_segments,
Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line,
Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::chromosome,
Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow,
Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript,
Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation,
Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI,
Bio::Das, GD
AUTHOR¶
Xiaokang Pan <pan@cshl.org>
Copyright (c) 2001 BDGP
This library is free software; you can redistribute it and/or modify it under
the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of
warranty.