NAME¶

gmx-wheel - Plot helical wheels

SYNOPSIS¶

gmx wheel [-f [<.dat>]] [-o [<.eps>]] [-nice <int>] [-r0 <int>]
[-rot0 <real>] [-T <string>] [-[no]nn]

DESCRIPTION¶

gmx wheel plots a helical wheel representation of your sequence. The input sequence is in the .dat file where the first line contains the number of residues and each consecutive line contains a residue name.

OPTIONS¶

Options to specify input and output files: -f [<.dat>] (nnnice.dat) (Input)
Generic data file -o [<.eps>] (plot.eps) (Output)
Encapsulated PostScript (tm) file Other options: -nice <int> (19)
Set the nicelevel -r0 <int> (1)
The first residue number in the sequence -rot0 <real> (0)
Rotate around an angle initially (90 degrees makes sense) -T <string>
Plot a title in the center of the wheel (must be shorter than 10 characters, or it will overwrite the wheel) -[no]nn (yes)
Toggle numbers

SEE ALSO¶

gromacs(7) More information about GROMACS is available at <http://www.gromacs.org/>.