'\" t
.\" Title: gt-sketch
.\" Author: [FIXME: author] [see http://docbook.sf.net/el/author]
.\" Generator: DocBook XSL Stylesheets v1.78.1
.\" Date: 09/05/2014
.\" Manual: GenomeTools Manual
.\" Source: GenomeTools 1.5.3
.\" Language: English
.\"
.TH "GT\-SKETCH" "1" "09/05/2014" "GenomeTools 1\&.5\&.3" "GenomeTools Manual"
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.SH "NAME"
gt-sketch \- Create graphical representation of GFF3 annotation files\&.
.SH "SYNOPSIS"
.sp
\fBgt sketch\fR [option \&...] image_file [GFF3_file \&...]
.SH "DESCRIPTION"
.PP
\fB\-pipe\fR [\fIyes|no\fR]
.RS 4
use pipe mode (i\&.e\&., show all gff3 features on stdout) (default: no)
.RE
.PP
\fB\-flattenfiles\fR [\fIyes|no\fR]
.RS 4
do not group tracks by source file name and remove file names from track description (default: no)
.RE
.PP
\fB\-seqid\fR [\fIstring\fR]
.RS 4
sequence region identifier default: first one in file (default: undefined)
.RE
.PP
\fB\-start\fR [\fIvalue\fR]
.RS 4
start position default: first region start (default: undefined)
.RE
.PP
\fB\-end\fR [\fIvalue\fR]
.RS 4
end position default: last region end (default: undefined)
.RE
.PP
\fB\-width\fR [\fIvalue\fR]
.RS 4
target image width (in pixel) (default: 800)
.RE
.PP
\fB\-style\fR [\fIstring\fR]
.RS 4
style file to use (default: undefined)
.RE
.PP
\fB\-format\fR [\fI\&...\fR]
.RS 4
output graphics format choose from png|pdf|svg|ps (default: png)
.RE
.PP
\fB\-input\fR [\fI\&...\fR]
.RS 4
input data format choose from gff|bed|gtf (default: gff)
.RE
.PP
\fB\-addintrons\fR [\fIyes|no\fR]
.RS 4
add intron features between existing exon features (before drawing) (default: no)
.RE
.PP
\fB\-unsafe\fR [\fIyes|no\fR]
.RS 4
enable unsafe mode for style file (default: no)
.RE
.PP
\fB\-v\fR [\fIyes|no\fR]
.RS 4
be verbose (default: no)
.RE
.PP
\fB\-force\fR [\fIyes|no\fR]
.RS 4
force writing to output file (default: no)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to \&.