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GT-ENCSEQ-SAMPLE(1) GenomeTools Manual GT-ENCSEQ-SAMPLE(1)

NAME

gt-encseq-sample - Decode/extract encoded sequences by random choice.

SYNOPSIS

gt encseq sample (sequence_file|indexname)

DESCRIPTION

-mirrored [yes|no]
virtually append the reverse complement of each sequence (default: no)
-lossless [yes|no]
allow lossless original sequence retrieval (default: no)
-dir [string]
specify reading direction (fwd, cpl, rev, rcl) (default: fwd)
-singlechars [yes|no]
do not use a GtEncseqReader but access each sequence character separately (default: no)
-length [value]
minimum length to be extracted (default: undefined)
-seqrange [start end]
extract multiple consecutive sequences (default: undefined)
-output [...]
specify output format (choose from fasta|concat) (default: fasta)
-sepchar [string]
specify character to print as SEPARATOR (default: |)
-help
display help for basic options and exit
-help+
display help for all options and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
09/05/2014 GenomeTools 1.5.3