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GT-CONGRUENCE-SPAC(1) GenomeTools Manual GT-CONGRUENCE-SPAC(1)

NAME

gt-congruence-spacedseed - Match spaced seeds.

SYNOPSIS

gt congruence spacedseed [options]

DESCRIPTION

-esa [string]
Specify index (enhanced suffix array) (default: undefined)
-pck [string]
Specify index (packed index) (default: undefined)
-q
Specify files containing the query sequences
-v [yes|no]
be verbose (default: no)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <kurtz@zbh.uni-hamburg.de>.
09/05/2014 GenomeTools 1.5.3