NAME¶
Bio::Graphics::Browser2::PluginSet -- A set of plugins
SYNOPSIS¶
None. Used internally by gbrowse & gbrowse_img.
METHODS¶
- $plugin_set =
Bio::Graphics::Browser2::PluginSet->new($config,$state,@search_path)
- Initialize plugins according to the configuration, page settings and the
plugin search path. Returns an object.
- $plugin_set->configure($database)
- Configure the plugins given the database.
- $plugin_set->annotate($segment,$feature_files,$rel2abs)
- Run plugin annotations on the $segment, adding the resulting feature files
to the hash ref in $feature_files ({track_name=>$feature_list}). The
$rel2abs argument holds a coordinate mapper callback, but is currently
unused.
SEE ALSO¶
Bio::Graphics::Browser
AUTHOR¶
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2005 Cold Spring Harbor Laboratory
This package and its accompanying libraries is free software; you can
redistribute it and/or modify it under the terms of the GPL (either version 1,
or at your option, any later version) or the Artistic License 2.0. Refer to
LICENSE for the full license text. In addition, please see DISCLAIMER.txt for
disclaimers of warranty.