NAME¶

fastaq_translate

DESCRIPTION¶

fastaq_translate <in.fasta/q> <out.fasta> Translates all sequences in a fasta or fastq file. Output is always fasta format

positional arguments:¶

in.fasta/q

Name of fasta/q file to be translated

out.fasta

Name of output fasta file

optional arguments:¶

-h, --help

show this help message and exit

--frame {0,1,2}

Frame to translate [0]

AUTHOR¶

fastaq_translate was originally written by Martin Hunt (mh12@sanger.ac.uk)

COPYING¶

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.