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FASTAQ_TO_TILING_BAM(1) | Fastaq executables | FASTAQ_TO_TILING_BAM(1) |
NAME¶
fastaq_to_tiling_bamDESCRIPTION¶
fastaq_to_tiling_bam [options] <fasta/q in> <read length> <read step> <read prefix> <out.bam> Takes a fasta/q file. Makes a BAM file containing perfect (unpaired) reads tiling the whole genome
positional arguments:¶
- infile
- Name of input fasta/q file
- read_length
- Length of reads
- read_step
- Distance between start of each read
- read_prefix
- Prefix of read names
- outfile
- Name of output BAM file
optional arguments:¶
- -h, --help
- show this help message and exit
- --read_group READ_GROUP
- Add the given read group ID to all reads [42]
AUTHOR¶
fastaq_to_tiling_bam was originally written by Martin Hunt (mh12@sanger.ac.uk)COPYING¶
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.October 2014 | Fastaq |