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FASTAQ_GET_SEQ_FLANKING_GAPS(1) | Fastaq executables | FASTAQ_GET_SEQ_FLANKING_GAPS(1) |
NAME¶
fastaq_get_seq_flanking_gapsDESCRIPTION¶
fastaq_get_seq_flanking_gaps [options] <fasta/q in> <fasta/q out> Gets the sequences either side of gaps in a fasta/q file
positional arguments:¶
- infile
- Name of input fasta/q file
- outfile
- Name of output fasta/q file
optional arguments:¶
- -h, --help
- show this help message and exit
- --left INT
- Number of bases to get to left of gap [25]
- --right INT
- Number of bases to get to right of gap [25]
AUTHOR¶
fastaq_get_seq_flanking_gaps was originally written by Martin Hunt (mh12@sanger.ac.uk)COPYING¶
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.October 2014 | Fastaq |