NAME¶

fastaq_enumerate_names

DESCRIPTION¶

fastaq_enumerate_names [options] <fasta/q in> <fasta/q out> Renames sequences in a file, calling them 1,2,3... etc

positional arguments:¶

infile

Name of fasta/q file to be read

outfile

Name of output fasta/q file

optional arguments:¶

-h, --help

show this help message and exit

--start_index START_INDEX

Starting number [1]

--rename_file RENAME_FILE

If used, will write a file of old name to new name

--keep_suffix

Use this to keep a /1 or /2 suffix at the end of each name

AUTHOR¶

fastaq_enumerate_names was originally written by Martin Hunt (mh12@sanger.ac.uk)

COPYING¶

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.