.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
.TH FASTAQ_ENUMERATE_NAMES "1" "October 2014" "Fastaq" "Fastaq executables"
.SH NAME
fastaq_enumerate_names
.SH DESCRIPTION
 fastaq_enumerate_names [options] <fasta/q in> <fasta/q out>
.PP
Renames sequences in a file, calling them 1,2,3... etc
.SS "positional arguments:"
.TP
infile
Name of fasta/q file to be read
.TP
outfile
Name of output fasta/q file
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-start_index\fR START_INDEX
Starting number [1]
.TP
\fB\-\-rename_file\fR RENAME_FILE
If used, will write a file of old name to new name
.TP
\fB\-\-keep_suffix\fR
Use this to keep a \fI\,/1\/\fP or \fI\,/2\/\fP suffix at the end of each
name


.SH "AUTHOR"
.sp
fastaq_enumerate_names was originally written by Martin Hunt (mh12@sanger.ac.uk)

.SH "COPYING"
.sp
Wellcome Trust Sanger Institute Copyright \(co 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version\&.