WORDMATCH(1e) | EMBOSS Manual for Debian | WORDMATCH(1e) |
NAME¶
wordmatch - Finds regions of identity (exact matches) of two sequencesSYNOPSIS¶
wordmatch -asequence seqset
-bsequence seqall
-wordsize integer
[-dumpalign toggle]
-outfile align
[-logfile outfile] [
-dumpfeat toggle]
-aoutfeat featout
-boutfeat featout
wordmatch -help
DESCRIPTION¶
wordmatch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Local" command group(s).OPTIONS¶
Input section¶
-asequence seqset -bsequence seqallRequired section¶
-wordsize integerDefault value: 4
Output section¶
-dumpalign toggleDefault value: Y
-outfile align
-logfile outfile
Statistics on distribution of kmers and matches Default
value: wordmatch.log
-dumpfeat toggle
Default value: Y
-aoutfeat featout
-boutfeat featout
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
wordmatch is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |