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SHOWDB(1e) EMBOSS Manual for Debian SHOWDB(1e)

NAME

showdb - Displays information on configured databases

SYNOPSIS

showdb [-database string] [-html boolean] [-protein boolean] [ -nucleic  boolean] [-sequence  boolean] [-feature  boolean] [-text boolean] [-taxonomy boolean] [-resource  boolean] [-assembly  boolean] [-obo boolean] [-full boolean] [ -methods boolean] [-fields boolean] [-defined boolean] [-release boolean] -only toggle -heading boolean -type boolean -id boolean -query boolean -all boolean -comment boolean [ -outfile outfile]
showdb -help

DESCRIPTION

showdb is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Data resources" command group(s).

OPTIONS

Input section

-database string

Additional section

-html boolean
Default value: N
-protein boolean
Default value: Y
-nucleic boolean
Default value: Y
-sequence boolean
Default value: Y
-feature boolean
Default value: Y
-text boolean
Default value: Y
-taxonomy boolean
Default value: Y
-resource boolean
Default value: Y
-assembly boolean
Default value: Y
-obo boolean
Default value: Y
-full boolean
Default value: N
-methods boolean
This displays the access methods that can be used on this database, for all, query or ID access Default value: $(full)
-fields boolean
This displays the search fields that can be used on this database, other than the standard 'id' or 'acc' fields. Default value: $(full)
-defined boolean
This displays a short name for the file containing the database definition Default value: $(full)
-release boolean
Default value: $(full)

Advanced section

-only toggle
This is a way of shortening the command line if you only want a few standard columns to be displayed. Instead of specifying: '-nohead -notype -noid -noquery -noall' to get only the comment output, you can specify '-only -comment' Default value: N
-heading boolean
Default value: @(!$(only))
-type boolean
Default value: @(!$(only))
-id boolean
Default value: @(!$(only))
-query boolean
Default value: @(!$(only))
-all boolean
Default value: @(!$(only))
-comment boolean
Default value: @(!$(only))

Output section

-outfile outfile
Default value: stdout

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

showdb is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 EMBOSS 6.4.0