Scroll to navigation

RESTOVER(1e) EMBOSS Manual for Debian RESTOVER(1e)

NAME

restover - Find restriction enzymes producing a specific overhang

SYNOPSIS

restover -sequence seqall -datafile  datafile -mfile datafile -seqcomp string -min integer -max integer -single boolean -threeprime boolean -blunt boolean -sticky boolean -ambiguity boolean -plasmid boolean -methylation  boolean -commercial boolean -html boolean -limit boolean -alphabetic boolean -fragments  boolean -outfile outfile
restover -help

DESCRIPTION

restover is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Restriction" command group(s).

OPTIONS

Input section

-sequence seqall
-datafile datafile
-mfile datafile
Default value: Emethylsites.dat

Required section

-seqcomp string

Advanced section

-min integer
Default value: 1
-max integer
Default value: 2000000000
-single boolean
Default value: N
-threeprime boolean
Default value: N
-blunt boolean
Default value: Y
-sticky boolean
Default value: Y
-ambiguity boolean
Default value: Y
-plasmid boolean
Default value: N
-methylation boolean
If this is set then RE recognition sites will not match methylated bases. Default value: N
-commercial boolean
Default value: Y

Output section

-html boolean
Default value: N
-limit boolean
Default value: Y
-alphabetic boolean
Default value: N
-fragments boolean
Default value: N
-outfile outfile

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

restover is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 EMBOSS 6.4.0