MSBAR(1e) | EMBOSS Manual for Debian | MSBAR(1e) |
NAME¶
msbar - Mutate a sequenceSYNOPSIS¶
msbar -sequence seqall
-othersequence seqall
-count integer
-point list
-block list
-codon list
-inframe boolean
-minimum integer
-maximum integer
-outseq seqoutall
msbar -help
DESCRIPTION¶
msbar is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Mutation,Protein:Mutation" command group(s).OPTIONS¶
Input section¶
-sequence seqall -othersequence seqallIf you require that the resulting mutated sequence should
not match a set of other sequences, then you can specify that set of sequences
here. For example, if you require that the mutated sequence should not be the
same as the input sequence, enter the input sequence here. If you want the
result to be different to previous results of this program, specify the
previous result sequences here. The program will check that the result does
not match the sequences specified here before writing it out. If a match is
found, then the mutation is started again with a fresh copy of the input
sequence. If, after 10 such retries, there is still a match to the set of
sequence given here, then the matching mutated sequence is written with a
warning message. Default value: asis:N
Required section¶
-count integerDefault value: 1
-point list
-block list
-codon list
Types of codon mutations to perform. These are only done
if the sequence is nucleic.
Additional section¶
-inframe booleanDefault value: N
Advanced section¶
-minimum integerDefault value: 1
-maximum integer
Default value: 10
Output section¶
-outseq seqoutallBUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
msbar is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |