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INFOSEQ(1e) EMBOSS Manual for Debian INFOSEQ(1e)

NAME

infoseq - Display basic information about sequences

SYNOPSIS

infoseq -sequence seqall -columns  boolean -delimiter string [-outfile outfile] [-html boolean] -only boolean -heading boolean -usa boolean -database boolean -name boolean -accession boolean -gi boolean -seqversion boolean -type boolean -length boolean -pgc boolean -organism boolean -description  boolean
infoseq -help

DESCRIPTION

infoseq is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Data retrieval:Sequence data" command group(s).

OPTIONS

Input section

-sequence seqall

Advanced section

-columns boolean
Set this option on (Y) to print the sequence information into neat, aligned columns in the output file. Alternatively, leave it unset (N), in which case the information records will be delimited by a character, which you may specify by using the -delimiter option. In other words, if -columns is set on, the -delimiter option is overriden. Default value: Y
-delimiter string
This string, which is usually a single character only, is used to delimit individual records in the text output file. It could be a space character, a tab character, a pipe character or any other character or string. Default value: |

Output section

-outfile outfile
If you enter the name of a file here then this program will write the sequence details into that file. Default value: stdout
-html boolean
Default value: N
-only boolean
This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: '-nohead -noname -noacc -notype -nopgc -nodesc' to get only the length output, you can specify '-only -length' Default value: N
-heading boolean
Default value: Y
-usa boolean
Default value: @(!$(only))
-database boolean
Default value: @(!$(only))
-name boolean
Default value: @(!$(only))
-accession boolean
Default value: @(!$(only))
-gi boolean
Default value: N
-seqversion boolean
Default value: N
-type boolean
Default value: @(!$(only))
-length boolean
Default value: @(!$(only))
-pgc boolean
Default value: @(!$(only))
-organism boolean
Default value: @(!$(only))
-description boolean
Default value: @(!$(only))

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

infoseq is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 EMBOSS 6.4.0