EDAMCLEAN(1e) | EMBOSS Manual for Debian | EDAMCLEAN(1e) |
NAME¶
edamclean - Validate and fix EDAM OBO ontologySYNOPSIS¶
edamclean -edaminfile infile
-taxdirectory directory
-mode selection
-edamoutfile outfile
-logfile outfile
-xmlfile outfile
-xmloutdir outdir
edamclean -help
DESCRIPTION¶
edamclean is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Ontology:EDAM" command group(s).OPTIONS¶
Input section¶
-edaminfile infileDefault value: /homes/jison/edam/EDAM.obo
-taxdirectory directory
Required section¶
-mode selectionDefault value: Report only
Advanced section¶
Output section¶
-edamoutfile outfileDefault value: EDAM_out.obo
-logfile outfile
Default value: EDAM_out.log
-xmlfile outfile
Default value: EDAM_out.xml
-xmloutdir outdir
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
edamclean is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |