DOTMATCHER(1e) | EMBOSS Manual for Debian | DOTMATCHER(1e) |
NAME¶
dotmatcher - Draw a threshold dotplot of two sequencesSYNOPSIS¶
dotmatcher
-asequence sequence
-bsequence sequence
[-matrixfile matrix]
[-windowsize integer]
[-threshold integer]
-stretch toggle
-graph graph
-xygraph xygraph
dotmatcher -help
DESCRIPTION¶
dotmatcher is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Dot plots" command group(s).OPTIONS¶
Input section¶
-asequence sequence -bsequence sequence -matrixfile matrixThis is the scoring matrix file used when comparing
sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file
'EDNAFULL' (for nucleic sequences). These files are found in the 'data'
directory of the EMBOSS installation.
Additional section¶
-windowsize integerDefault value: 10
-threshold integer
Default value: 23
Output section¶
-stretch toggleDisplay a non-proportional graph Default value: N
-graph graph
-xygraph xygraph
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
dotmatcher is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |