NAME¶
probe - Probe image data.
SYNOPSIS¶
probe InputImage
DESCRIPTION¶
This tool prints pixel values or symbolic labels at a list of user-provided
image coordinates.
OPTIONS¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
Main Options¶
- --coordinates
- Coordinate specification mode. Supported values: "absolute",
"indexed", "relative", "physical", where the
default is "absolute", or use one of the following:
- --absolute
- Use absolute volume coordinates. For each dimension, the valid range is
[0,FOV]. [This is the default]
- --indexed
- Use grid indexes to specify coordinates. For each dimension, the valid
value range is [0,Dims-1].
- --relative
- Use relative volume coordinates. For each dimension, the valid range is
[0,1].
- --physical
- Use physical volume coordinates. Each given location is transformed into
image coordinates via the inverse of the images's index-to-physical space
matrix.
- --interpolation
- Image interpolation method. Supported values: "nn",
"linear", "cubic", "pv",
"sinc-cosine", "sinc-hamming", where the default is
"nn", or use one of the following:
- --nn
- Nearest neighbor interpolation [This is the default]
- --linear
- Trilinear interpolation
- --cubic
- Tricubic interpolation
- --pv
- Partial volume interpolation
- --sinc-cosine
- Sinc interpolation with cosine window
- --sinc-hamming
- Sinc interpolation with Hamming window
- --sinc-window-radius <integer>
- Window radius for Sinc interpolation [Default: 3]
- --no-reorient
- Disable image reorientation into RAS alignment.
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
CMTK is developed with support from the NIAAA under Grant AA021697, National
Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data
Integration Component. From April 2009 through September 2011, CMTK
development and maintenance was supported by the NIBIB under Grant
EB008381.
