NAME¶
fibxform - Apply coordinate transformations to point coordinates in .fib file.
SYNOPSIS¶
fibxform XformList
DESCRIPTION¶
A file with fiber tracking results from the UNC Fiber Tracking tool is read from
Standard Input and one or more (concatenated) coordinate transformations are
applied to all fiber point coordinates. The result is written to Standard
Output, again in UNC fiber file format.
OPTIONS¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
Main Options¶
- --inversion-tolerance <double>
- Numerical tolerance of B-spline inversion in mm. Smaller values will lead
to more accurate inversion, but may increase failure rate. [Default:
0.001]
- --source-image <image-path>
- Set source image of the transformation (i.e., an image defining the space
in which fiber tracking was performed) to correct for differences in
orientation and coordinate space. [Default: NONE]
- --target-image <image-path>
- Set target image of the transformation (i.e., the image that the fiber
track points are mapped into) to correct for differences in orientation
and coordinate space. [Default: NONE]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
CMTK is developed with support from the NIAAA under Grant AA021697, National
Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data
Integration Component. From April 2009 through September 2011, CMTK
development and maintenance was supported by the NIBIB under Grant
EB008381.