NAME¶
bp_meta_gff.pl - Get/set Bio::DB::GFF meta-data
SYNOPSIS¶
# set the following meta data values
% bp_meta_gff.pl -d testdb tag1=value1 tag2=value2
# get the indicated meta data value
% bp_meta_gff.pl -d testdb tag1 tag2
DESCRIPTION¶
This script gets or sets metadata in a Bio::DB::GFF database. Not all adaptors
support this operation! To set a series of tags, pass a set of tag=value pairs
to the script. To get the contents of a series of tags, pass the bare tag
names.
The output from the get operation will be an easily parseable set of tag=value
pairs, one per line.
COMMAND-LINE OPTIONS¶
Command-line options can be abbreviated to single-letter options. e.g. -d
instead of --database.
--database <dsn> Mysql database name (default dbi:mysql:test)
--adaptor <adaptor> Mysql adaptor (default dbi::mysqlopt)
--user <user> Username for mysql authentication
--pass <password> Password for mysql authentication
SEE ALSO¶
Bio::DB::GFF
AUTHOR¶
Lincoln Stein, lstein@cshl.org
Copyright (c) 2002 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under
the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of
warranty.