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SURANKCO-TRAINING(1) User Commands SURANKCO-TRAINING(1)

NAME

surankco-training - training of random forest using contig features and contig scores

SYNOPSIS

surankco-training [ options]

DESCRIPTION

Training of random forest using contig features from surankco-feature(1) and contig scores from surankco-score(1).

OPTIONS

-f FEATURES, --features=FEATURES
Indicate a list of surankco feature files (comma separated), correct suffixes are mandatory ("*.features.txt")
-d DIRECTORY, --directory=DIRECTORY
Indicate a directory containing surankco feature files ("*.features.txt")
-o OUTPUT.FILENAME, --output.filename=OUTPUT.FILENAME
Indicate a name for the export of the random forest classifiers (default = "surankco_rfs.RData")
-e EXPONENTIAL.QUANTILE, --exponential.quantile=EXPONENTIAL.QUANTILE
Indicate an exponential distribution quantile to divide scores (default: 0.25)
-m MANUAL.THRESHOLDS, --manual.thresholds=MANUAL.THRESHOLDS
Indicate manual thresholds instead of quantiles, one per score each (comma separated) in the same order as in the score file
-h, --help
Show this help message and exit

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
March 2016 surankco-training 0.0.r5