table of contents
other versions
- jessie-backports 3.9.0+dfsg-1~bpo8+1
- stretch 3.9.1+dfsg-1
- testing 3.12.0+dfsg-1
- stretch-backports 3.12.0+dfsg-1~bpo9+1
- unstable 3.12.0+dfsg-1
| TRUSPADES(1) | TRUSPADES(1) |
NAME¶
truspades - truSPAdes genome assemblerSYNOPSIS¶
truspades [options] -o <output_dir>DESCRIPTION¶
truspades is the main executable for the truSPAdes software. It assembles genomic reads given to it and places the resulting assembly in <output_dir>.OPTIONS¶
Basic options¶
-o <output_dir>directory to store all the resulting files
(required)
--test
runs truSPAdes on toy dataset
-h/--help
prints this usage message
-t/--threads <int>
number of threads
--continue
continue interrupted launch
--construct-dataset
parse dataset from input folder
Input options¶
--input-dir <directory>directory with input data. Note that the directory should
contain only files with reads. This option can be used several times to
provide several input directories.
--dataset <file>:w:
file with dataset description