table of contents
other versions
- jessie-backports 3.8.0+dfsg-1~bpo8+1
- stretch 3.8.0+dfsg-1
- testing 3.12.0+dfsg-2
- stretch-backports 3.12.0+dfsg-2~bpo9+1
- unstable 3.12.0+dfsg-2
Bio::Roary::IterativeCdhit(3pm) | User Contributed Perl Documentation | Bio::Roary::IterativeCdhit(3pm) |
NAME¶
Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds, removing full clusters each timeVERSION¶
version 3.8.0SYNOPSIS¶
Run CDhit iteratively with reducing thresholds, removing full clusters each timeuse Bio::Roary::IterativeCdhit;
my $obj = Bio::Roary::IterativeCdhit->new( output_cd_hit_filename => 'output_cd_hit_filename.fa', output_combined_filename => 'output_combined_filename.fa', number_of_input_files => 5, output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa', ); $obj->run;
AUTHOR¶
Andrew J. Page <ap13@sanger.ac.uk>COPYRIGHT AND LICENSE¶
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. This is free software, licensed under:The GNU General Public License, Version 3, June 2007
2017-08-10 | perl v5.20.2 |