NAME¶

Bio::Roary::External::Mafft - Wrapper to run mafft

VERSION¶

version 3.8.0

SYNOPSIS¶

Wrapper to run mafft
use Bio::Roary::External::Mafft;

        my $mafft_obj = Bio::Roary::External::Mafft->new(
          input_filename  => $fasta_file,
          output_filename => $fasta_file.'.aln',
          job_runner      => 'Local'
        );
        $mafft_obj->run();

AUTHOR¶

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE¶

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007