NAME¶
mhap - probabilistic sequence overlapping
SYNOPSIS¶
mhap -s<fasta/dat from/self file> [-q<fasta/dat to
file>] [-f<kmer filter list, must be sorted>]
java -server -Xmx<memory>
-jar $(which mhap)
-s<fasta/dat from/self file> [-q<fasta/dat to file>]
[-f<kmer filter list, must be sorted>]
generate precomputed binaries:
java -server -Xmx<memory>
-jar $(which mhap)
-p<directory of fasta files>
-q <output directory>
[-f<kmer filter list, must be sorted>]
DESCRIPTION¶
MHAP (MinHash Alignment Protocol) is a tool for finding overlaps of long-read
sequences (such as PacBio or Nanopore) in bioinformatics.
OPTIONS¶
- -h --help
- Show summary of available options.
- --version
- Displays the version.