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MAPMERS(1) User Commands MAPMERS(1)

NAME

mapMers - report statistics of mapping kmers to sequences

SYNOPSIS

mapMers {-stats|-regions|-details} -m mersize -mers mers -seq fasta

OPTIONS

-stats
reports the mean, minimum, and maximum for each sequence, along with a log2 histogram of the counts
-regions
reports regions with kmer coverage
-details
reports the forward and reverse count in the database for each kmer in the sequence
-m mersize
-mers mers
the meryl(1) database
-seq fasta
input sequence file

SEE ALSO

meryl(1), mapMers-depth(1)
May 2015 mapMers 0~20150520+2004