'\" t
.\" Title: gt-uniquesub
.\" Author: [FIXME: author] [see http://docbook.sf.net/el/author]
.\" Generator: DocBook XSL Stylesheets v1.78.1
.\" Date: 07/29/2016
.\" Manual: GenomeTools Manual
.\" Source: GenomeTools 1.5.9
.\" Language: English
.\"
.TH "GT\-UNIQUESUB" "1" "07/29/2016" "GenomeTools 1\&.5\&.9" "GenomeTools Manual"
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.SH "NAME"
gt-uniquesub \- Compute length of minimum unique prefixes\&.
.SH "SYNOPSIS"
.sp
\fBgt uniquesub\fR [options \&...] \-query queryfile [\&...]
.SH "DESCRIPTION"
.PP
\fB\-fmi\fR [\fIstring\fR]
.RS 4
specify fmindex (default: undefined)
.RE
.PP
\fB\-esa\fR [\fIstring\fR]
.RS 4
specify suffix array (default: undefined)
.RE
.PP
\fB\-pck\fR [\fIstring\fR]
.RS 4
specify packed index (default: undefined)
.RE
.PP
\fB\-query\fR
.RS 4
specify queryfiles
.RE
.PP
\fB\-min\fR [\fIvalue\fR]
.RS 4
only output length if >= given minimum length (default: 0)
.RE
.PP
\fB\-max\fR [\fIvalue\fR]
.RS 4
only output length if ⇐ given maximum length (default: 0)
.RE
.PP
\fB\-output\fR
.RS 4
set output flags (sequence, querypos)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "ADDITIONAL INFORMATION"
.sp
For detailed information, please refer to the manual of uniquesub\&.
.SH "REPORTING BUGS"
.sp
Report bugs to \&.