table of contents
other versions
- jessie 1.5.3-2
- jessie-backports 1.5.9+ds-2~bpo8+1
- stretch 1.5.9+ds-4
- testing 1.5.10+ds-2
- unstable 1.5.10+ds-3
GT-SEQUNIQ(1) | GenomeTools Manual | GT-SEQUNIQ(1) |
NAME¶
gt-sequniq - Filter out repeated sequences in given sequence files.SYNOPSIS¶
gt sequniq [option ...] sequence_file [...]DESCRIPTION¶
-rev [yes|no]also filter out sequences whose reverse complement is
identical to a sequence already output (default: no)
-v [yes|no]
be verbose (default: no)
-width [value]
set output width for FASTA sequence printing (0 disables
formatting) (default: 0)
-o [filename]
redirect output to specified file (default:
undefined)
-gzip [yes|no]
write gzip compressed output file (default: no)
-bzip2 [yes|no]
write bzip2 compressed output file (default: no)
-force [yes|no]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit
The tool will only remove identical duplicates of sequences, not substrings
contained within other sequences.
REPORTING BUGS¶
Report bugs to <gt-users@genometools.org>.07/29/2016 | GenomeTools 1.5.9 |