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GT-SEQUNIQ(1) GenomeTools Manual GT-SEQUNIQ(1)

NAME

gt-sequniq - Filter out repeated sequences in given sequence files.

SYNOPSIS

gt sequniq [option ...] sequence_file [...]

DESCRIPTION

-rev [yes|no]
also filter out sequences whose reverse complement is identical to a sequence already output (default: no)
-v [yes|no]
be verbose (default: no)
-width [value]
set output width for FASTA sequence printing (0 disables formatting) (default: 0)
-o [filename]
redirect output to specified file (default: undefined)
-gzip [yes|no]
write gzip compressed output file (default: no)
-bzip2 [yes|no]
write bzip2 compressed output file (default: no)
-force [yes|no]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit
The tool will only remove identical duplicates of sequences, not substrings contained within other sequences.

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
07/29/2016 GenomeTools 1.5.9