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GT-SEQSTAT(1) GenomeTools Manual GT-SEQSTAT(1)

NAME

gt-seqstat - Calculate statistics for fasta file(s).

SYNOPSIS

gt seqstat [options] file [...]

DESCRIPTION

-v [yes|no]
be verbose (default: no)
-distlen [yes|no]
show distribution of sequence length (default: no)
-b [value]
bucket size for distlen option (default: 100)
-binary [yes|no]
use a binary format for distlen output output filename: <first_input_filename>.distlen bucketsize: 1 (default: no)
-contigs [yes|no]
summary of contigs set statistics (default: yes)
-astretch [yes|no]
show distribution of A-substrings (default: no)
-genome [value]
set genome length for NG50/NG80 calculation (default: 0)
-help
display help for basic options and exit
-help+
display help for all options and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
07/29/2016 GenomeTools 1.5.9