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GT-SEQFILTER(1) GenomeTools Manual GT-SEQFILTER(1)

NAME

gt-seqfilter - Filter the given sequence file(s) and show the results on stdout.

SYNOPSIS

gt seqfilter [option ...] [sequence_file ...]

DESCRIPTION

-minlength [value]
set minimum length a sequence must have to pass the filter (default: undefined)
-maxlength [value]
set maximum length a sequence can have to pass the filter (default: undefined)
-maxseqnum [value]
set the maximum number of sequences which can pass the filter (default: undefined)
-sample [value]
set a probability for each sequence to pass the filter (default: 1.000000)
-step [value]
only every step-th sequence passes the filter (default: 1)
-nowildcards [yes|no]
filter out seqences containing wildcards (default: no)
-width [value]
set output width for FASTA sequence printing (0 disables formatting) (default: 0)
-o [filename]
redirect output to specified file (default: undefined)
-gzip [yes|no]
write gzip compressed output file (default: no)
-bzip2 [yes|no]
write bzip2 compressed output file (default: no)
-force [yes|no]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
07/29/2016 GenomeTools 1.5.9