'\" t
.\" Title: gt-encseq2spm
.\" Author: [FIXME: author] [see http://docbook.sf.net/el/author]
.\" Generator: DocBook XSL Stylesheets v1.78.1
.\" Date: 07/29/2016
.\" Manual: GenomeTools Manual
.\" Source: GenomeTools 1.5.9
.\" Language: English
.\"
.TH "GT\-ENCSEQ2SPM" "1" "07/29/2016" "GenomeTools 1\&.5\&.9" "GenomeTools Manual"
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.SH "NAME"
gt-encseq2spm \- Compute suffix prefix matches from encoded sequence\&.
.SH "SYNOPSIS"
.sp
\fBgt encseq2spm\fR [option \&...] [file]
.SH "DESCRIPTION"
.PP
\fB\-l\fR [\fIvalue\fR]
.RS 4
specify the minimum length (default: 0)
.RE
.PP
\fB\-parts\fR [\fIvalue\fR]
.RS 4
specify the number of parts (default: 0)
.RE
.PP
\fB\-memlimit\fR [\fIstring\fR]
.RS 4
specify maximal amount of memory to be used during index construction (in bytes, the keywords
\fIMB\fR
and
\fIGB\fR
are allowed) (default: undefined)
.RE
.PP
\fB\-singlestrand\fR [\fIyes|no\fR]
.RS 4
use only the forward strand of the sequence (default: no)
.RE
.PP
\fB\-spm\fR [\fIstring\fR]
.RS 4
specify output for spms (default: undefined)
.RE
.PP
\fB\-ii\fR [\fIstring\fR]
.RS 4
specify the input sequence (default: undefined)
.RE
.PP
\fB\-v\fR [\fIyes|no\fR]
.RS 4
be verbose (default: no)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to \&.