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GT-ENCSEQ-CHECK(1) GenomeTools Manual GT-ENCSEQ-CHECK(1)

NAME

gt-encseq-check - Check the consistency of an encoded sequence file.

SYNOPSIS

gt encseq check [option ...] [file]

DESCRIPTION

-scantrials [value]
specify number of scan trials (default: 0)
-multicharcmptrials [value]
specify number of multicharacter trials (default: 0)
-prefixlength [value]
prefix length (default: 0)
-nocheckunit [yes|no]
do not run checkextractunitatpos (default: no)
-mirrored [yes|no]
use mirrored encseq (default: no)
-v [yes|no]
be verbose (default: no)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
07/29/2016 GenomeTools 1.5.9