'\" t
.\"     Title: gt-encseq-check
.\"    Author: [FIXME: author] [see http://docbook.sf.net/el/author]
.\" Generator: DocBook XSL Stylesheets v1.78.1 <http://docbook.sf.net/>
.\"      Date: 07/29/2016
.\"    Manual: GenomeTools Manual
.\"    Source: GenomeTools 1.5.9
.\"  Language: English
.\"
.TH "GT\-ENCSEQ\-CHECK" "1" "07/29/2016" "GenomeTools 1\&.5\&.9" "GenomeTools Manual"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
.\" http://bugs.debian.org/507673
.\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html
.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
.ie \n(.g .ds Aq \(aq
.el       .ds Aq '
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
.\" disable hyphenation
.nh
.\" disable justification (adjust text to left margin only)
.ad l
.\" -----------------------------------------------------------------
.\" * MAIN CONTENT STARTS HERE *
.\" -----------------------------------------------------------------
.SH "NAME"
gt-encseq-check \- Check the consistency of an encoded sequence file\&.
.SH "SYNOPSIS"
.sp
\fBgt encseq check\fR [option \&...] [file]
.SH "DESCRIPTION"
.PP
\fB\-scantrials\fR [\fIvalue\fR]
.RS 4
specify number of scan trials (default: 0)
.RE
.PP
\fB\-multicharcmptrials\fR [\fIvalue\fR]
.RS 4
specify number of multicharacter trials (default: 0)
.RE
.PP
\fB\-prefixlength\fR [\fIvalue\fR]
.RS 4
prefix length (default: 0)
.RE
.PP
\fB\-nocheckunit\fR [\fIyes|no\fR]
.RS 4
do not run checkextractunitatpos (default: no)
.RE
.PP
\fB\-mirrored\fR [\fIyes|no\fR]
.RS 4
use mirrored encseq (default: no)
.RE
.PP
\fB\-v\fR [\fIyes|no\fR]
.RS 4
be verbose (default: no)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to <gt\-users@genometools\&.org>\&.