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GT-COMPREADS-REFDE(1) GenomeTools Manual GT-COMPREADS-REFDE(1)

NAME

gt-compreads-refdecompress - Decodes a given RCR (Reference Compressed Reads).

SYNOPSIS

gt compreads refdecompress [option ...] (-file file)

DESCRIPTION

-v [yes|no]
be verbose (default: no)
-qnames [yes|no]
decode read names, default is to just number them (default: no)
-ref [string]
Index file (generated by the gt encseq tool) for reference genome. (default: undefined)
-rcr [string]
specify base name of file containing RCR. (default: undefined)
-name [string]
specify base name for decoded RCR (suffix will be ".rcr.decoded") (default: undefined)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
07/29/2016 GenomeTools 1.5.9