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other versions
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FASTAQ-SCAFFOLDS_TO_CONTIGS(1) | User Commands | FASTAQ-SCAFFOLDS_TO_CONTIGS(1) |
NAME¶
fastaq_scaffolds_to_contigs - Creates a file of contigs from a file of scaffoldsDESCRIPTION¶
usage: fastaq_scaffolds_to_contigs [options] <infile> <outfile> Creates a file of contigs from a file of scaffolds - i.e. breaks at every gap in the inputpositional arguments:¶
- infile
- Name of input file
- outfile
- Name of output contigs file
optional arguments:¶
- -h, --help
- show this help message and exit
- --number_contigs
- Use this to enumerate contig names 1,2,3,... within each scaffold
July 2017 | fastaq 3.14.0 |