NAME¶
fastaq_capillary_to_pairs - Converts file of capillary reads to paired and
unpaired files
DESCRIPTION¶
usage: fastaq_capillary_to_pairs <infile> <outfiles prefix>
Given a file of capillary reads, makes an interleaved file of read pairs (where
more than read from same ligation, takes the longest read) and a file of
unpaired reads. Replaces the .p1k/.q1k part of read names to denote fwd/rev
reads with
/1 and
/2
positional arguments:¶
- infile
- Name of input fasta/q file
- outfiles prefix
- Prefix of output files
optional arguments:¶
- -h, --help
- show this help message and exit