.TH "CSG_STAT" "1" " csg_stat User Manual" "VOTCA Development Team"
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.SH NAME
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\fBcsg_stat\fP \- Part of the VOTCA package


.SH SYNOPSIS
.PP
\fBcsg_stat\fP [OPTIONS]
.PP
\fBcsg_stat\fP [\-\-help]


.SH DESCRIPTION
.PP

Calculate all distributions (bonded and non-bonded) specified in options file.
Optionally calculates update Eigen::Matrix3d for invere Monte Carlo. This program
is called inside the inverse scripts. Unlike csg_boltzmann, big systems
can be treated as well as non-bonded interactions can be evaluated.




.SH OPTIONS
.PP

Allowed options:

  -h [ --help ]             display this help and exit
  --verbose                 be loud and noisy
  --verbose1                be very loud and noisy
  -v [ --verbose2 ]         be extremly loud and noisy
  --top arg                 atomistic topology file

Mapping options:

  --cg arg                  [OPTIONAL] coarse graining mapping and bond 
                          definitions
                            (xml-file). If no file is given, program acts on 
                          original trajectory
  --map-ignore arg          list of molecules to ignore if mapping is done 
                          separated by ;

Specific options:

  --options arg             options file for coarse graining
  --do-imc                  write out additional Inverse Monte Carlo data
  --include-intra           do not exclude intramolecular neighbors
  --block-length arg        write blocks of this length, the averages are 
                          cleared after every write
  --ext arg (=dist.new)   Extension of the output

Threading options:

  --nt arg (=1)             number of threads

Trajectory options:

  --trj arg                 atomistic trajectory file
  --begin arg (=0)          skip frames before this time (only works for 
                          Gromacs files)
  --first-frame arg (=0)    start with this frame
  --nframes arg             process the given number of frames

.SH AUTHORS
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Written and maintained by the VOTCA Development Team <devs@votca.org>


.SH COPYRIGHT
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Copyright 2009\-2021 The VOTCA Development Team (http://www.votca.org)

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this  file
except in compliance with the License.  You may obtain a copy of the License at

       http://www.apache.org/licenses/LICENSE-2.0

Unless  required by applicable law or agreed to in writing, software distributed under the
License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY  KIND,
either  express  or  implied.   See  the  License  for  the  specific  language  governing
permissions and limitations under the License.