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srf2fasta(1) Staden io_lib srf2fasta(1)

NAME

srf2fasta - Converts SRF files to fasta format

SYNOPSIS

srf2fasta [-C] srf_archive

DESCRIPTION

srf2fasta extracts sequences from an SRF archive and writes them in fasta format to stdout.

OPTIONS

Masks out sequences tagged as bad quality.

EXAMPLES

To extract only the good quality sequences from runX.srf into runX.fasta.


srf2fasta -C runX.srf > runX.fasta

AUTHOR

James Bonfield, Wellcome Trust Sanger Institute

September 19