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RAPTOR(1) | RAPTOR(1) |
NAME¶
Raptor - A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
OPTIONS¶
Basic options:¶
- -h, --help
- Prints the help page.
- -hh, --advanced-help
- Prints the help page including advanced options.
- --version
- Prints the version information.
- --copyright
- Prints the copyright/license information.
- --export-help (std::string)
- Export the help page information. Value must be one of [html, man].
- --bins (std::filesystem::path)
- File containing one file per line per bin. The input file must exist and read permissions must be granted.
- --input (std::filesystem::path)
- The index to upgrade. Parts: Without suffix _0
- --output (std::filesystem::path)
- Path to new index.
- --window (unsigned 32 bit integer)
- The original window size. Value must be a positive integer.
- --kmer (unsigned 8 bit integer)
- The original kmer size. Value must be in range [1,32].
- --parts (unsigned 8 bit integer)
- Original index consisted of this many parts. Default: 1. Value must be a power of two.
- --compressed
- Original index was compressed.
VERSION¶
Last update: 2021-08-20--no-git
Raptor version: 2.0.1
(74f815358db47037e93a56b826a9df3692e55680--no-git)
Sharg version: 1.0.0
SeqAn version: 3.2.0
URL¶
LEGAL¶
Raptor Copyright: BSD 3-Clause License
Author: Enrico Seiler
Contact: enrico.seiler@fu-berlin.de
SeqAn Copyright: 2006-2022 Knut Reinert, FU-Berlin; released under the
3-clause BSDL.
In your academic works please cite: Raptor: A fast and space-efficient
pre-filter for querying very large collections of nucleotide sequences;
Enrico Seiler, Svenja Mehringer, Mitra Darvish, Etienne Turc, and Knut
Reinert; iScience 2021 24 (7): 102782. doi:
https://doi.org/10.1016/j.isci.2021.102782
For full copyright and/or warranty information see --copyright.
2021-08-20--no-git | raptor 2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git) |