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MINIMAP2.PY(1) User Commands MINIMAP2.PY(1)

NAME

minimap2.py - minimap2 Python3 interface

SYNOPSIS

minimap2.py [options] <ref.fa>|<ref.mmi> <query.fq>

OPTIONS

-x STR
preset: sr, map-pb, map-ont, asm5, asm10 or splice
-n INT
mininum number of minimizers
-m INT
mininum chaining score
-k INT
k-mer length
-w INT
minimizer window length
-r INT
band width
-c
output the cs tag

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
June 2020 minimap2.py 2.17