.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH PGEN_COMPRESS-PLAIN "1" "January 2023" "pgen_compress-plain Usage:" "User Commands"
.SH NAME
pgen_compress-plain \- whole genome SNP analysis
.SH DESCRIPTION
Usage:
pgen_compress [\-i] <input .bed or .pgen> <output filename> [sample_ct]
.IP
* sample_ct is required when loading a .bed file
* \fB\-i\fR causes the index to be saved to a separate .pgen.pgi file (usually it's
.IP
embedded at the front of the .pgen); this is compatible with fully
sequential .pgen writing
.PP
pgen_compress \fB\-u\fR <input .pgen> <output .bed>
.PP
pgen_compress [\-i] <input .bed or .pgen> <output filename> [sample_ct]
.IP
* sample_ct is required when loading a .bed file
* \fB\-i\fR causes the index to be saved to a separate .pgen.pgi file (usually it's
.IP
embedded at the front of the .pgen); this is compatible with fully
sequential .pgen writing
.PP
pgen_compress \fB\-u\fR <input .pgen> <output .bed>
.SH "SEE ALSO"
The full documentation for
.B pgen_compress-plain
is maintained as a Texinfo manual.  If the
.B info
and
.B pgen_compress-plain
programs are properly installed at your site, the command
.IP
.B info pgen_compress-plain
.PP
should give you access to the complete manual.