.TH GBSEQGET 1 2006-04-14 NCBI "NCBI Tools User's Manual"
.SH NAME
gbseqget \- format sequences from GenBank as an XML GBSet
.SH SYNOPSIS
.B gbseqget
[\|\fB\-\fP\|]
[\|\fB\-d\fP\ \fIfilename\fP\|]
[\|\fB\-i\fP\ \fIfilename\fP\|]
[\|\fB\-m\fP\ \fIn/p/b\fP\|]
[\|\fB\-n\fP\|]
[\|\fB\-o\fP\ \fIfilename\fP\|]
[\|\fB\-v\fP\|]
.SH DESCRIPTION
\fBgbseqget\fP retrieves biological sequence data from GenBank
(according to an input list of GI accession numbers) and prints it out
as an XML GBSet document.
.SH OPTIONS
A summary of options is included below.
.TP
\fB\-\fP
Print usage message
.TP
\fB\-d\fP\ \fIfilename\fP
Input file name for date list (desired accessions, one per line,
followed by a blank line and a list of allowed dates, also one per line)
.TP
\fB\-i\fP\ \fIfilename\fP
Input file name for GI list (default = stdin)
.TP
\fB\-m\fP\ \fIn/p/b\fP
Molecule type:
.RS
.PD 0
.IP n
Nucleotide (default)
.IP p
Protein
.IP b
Both
.PD
.RE
.TP
\fB\-n\fP
Return only new records (for which the given GI refers to an old version)
.TP
\fB\-o\fP\ \fIfilename\fP
Output file name for the XML GBSet (default = stdout)
.TP
\fB\-v\fP
Fetch SNP Variations
.SH NOTES
The GBSet format is deprecated in favor of INSDSet, which you can
produce by running \fBinsdseqget\fP in place of \fBgbseqget\fP.
.SH AUTHOR
The National Center for Biotechnology Information.
.SH SEE ALSO
.BR asn2gb (1),
.BR insdseqget (1).